History

1.3.0 (2026-04-15)

  • Move all building stuff into Interface;

  • Build also by chain or by structure;

  • Fuse together polypeptides coming from a single protein chain as a helper function;

1.2.0 (2026-04-05)

  • Optionally fuse together polypeptides coming from a single protein chain;

1.1.0 (2026-04-04)

  • Feat: method for getting the whole binding protein

  • Feat: method for getting binding NAs. Distinct from TRIMMED NAs

  • Feat: method for getting binding DSNAs. Distinct from TRIMMED DSNAs

  • Chore: rename method for getting TRIMMED NAs

  • Chore: rename method for getting TRIMMED NAs

1.0.1 (2026-04-04)

  • Fix: for binding domain, we use the same extraction method of trimmed nucleic acids. It won’t give problems with “non existent” residues, like in 7O4J.

1.0.0 (2026-04-03)

  • InterfaceBuilder class builds everything, do not let Interface build anything anymore:

    • It extracts contacts and assign them to Interface

    • It also builds binding domain, bound nucleic acids and bound double stranded nucleic acids

  • Coherency with PDBNucleicAcids package: a single argument in a method for standard nucleotides

0.5.1 (2026-02-27)

  • Forgot about documentation

0.5.0 (2026-02-27)

  • Get nucleic acid binding domain from protein. With tests

  • Fixed number of atoms features is defunct for now

0.4.0 (2025-04-16)

  • Fixed number of atoms, either protein or DNA.

0.3.2 (2025-03-10)

  • Fix: for getting bound double-strands, if one DSNA empties during trimming it raised error

0.3.1 (2025-03-05)

  • Proper tests

0.3.0 (2025-03-05)

  • Feature: get all continous protein-bound double-strand nucleic acids;

0.2.3 (2025-03-05)

  • fix: bump-my-version was updating pdbnucleicacids version too

  • fix: import classes instead of modules

  • chore: remove old tox environments

0.2.2 (2025-03-04)

  • Interface getter methods to get residues

  • Interface raise error condition in case of no protein in the structure

  • Coverage badge on README

  • Full documentation

0.2.1 (2025-03-1)

  • Gitlab CI

0.2.0 (2025-02-28)

  • Features: Interface class, with getter methods for atoms, dataframes etc

0.1.0 (2025-02-08)

  • First release on PyPI.

  • Feature: interface as pandas dataframe